QB bounced check instructions

I followed the instructions included with Pro 2006, here's my problem.I created (2) new items per the instructions, "Bounced Check" which is linked to my checking account as a non-tax other charge & "Bad Check Charge" which is linked to a non-taxed "income" account.I created an invoice to the customer using both of the above new items. I later received a new check from the customer for the amount of the bounced check invoice I created. Then used the "Receive payment" and deposited it. Now when I go to reconcile the checking account the invoice shows up in the checks & payments window.It also shows up in the check register as an INV type linked to A/R. When I double click on it from within the "checks & payments" window it takes me back to the "Bounced Check" invoice where it's showed as PAID. Is this correct? There's nothing on my bank statement to check mark it to while reconciling.Also when I do a search for the invoice number in the "Find" function, it does not show up, but I can find it when I click back to it from the create invoices window.I am no expert at this and only good enough to be dangerous, but I don't understand why it works like this because I would think that if it shows up in the "Checks & Payments window, it's reducing my checking account instead of crediting it for the customers payment.